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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs9473555 1 rs4715130 chr6:49416825 MUT chr6:49398994-49431031:- 0.28 9.58 5.24E-20 Folate pathway vitamin levels
THCA cis rs1474698 1 rs4715590 chr6:56060017 COL21A1 chr6:55921389-56258892:- 0.77 16.29 8.85E-48 Pulse pressure
THCA cis rs559928 1 rs471584 chr11:64149252 GPR137 chr11:64037534-64056965:+ 0.15 3.48 0.00055 Crohn's disease;Ulcerative colitis;Inflammatory bowel disease
THCA cis rs559928 1 rs471584 chr11:64149252 VEGFB chr11:64002266-64006258:+ 0.13 3.5 0.0005 Crohn's disease;Ulcerative colitis;Inflammatory bowel disease
THCA cis rs7762018 1 rs4716375 chr6:170071218 C6orf70 chr6:170151721-170181617:+ 0.27 5.21 2.84E-7 Thiazide-induced adverse metabolic effects in hypertensive patients
THCA cis rs7762018 1 rs4716375 chr6:170071218 WDR27 chr6:169857307-170102159:- -0.2 -5.94 5.36E-9 Thiazide-induced adverse metabolic effects in hypertensive patients
THCA cis rs7762018 1 rs4716378 chr6:170086568 C6orf70 chr6:170151721-170181617:+ 0.27 5.27 2.02E-7 Thiazide-induced adverse metabolic effects in hypertensive patients
THCA cis rs7762018 1 rs4716378 chr6:170086568 WDR27 chr6:169857307-170102159:- -0.19 -5.76 1.49E-8 Thiazide-induced adverse metabolic effects in hypertensive patients
THCA cis rs7762018 1 rs4716380 chr6:170090399 C6orf70 chr6:170151721-170181617:+ 0.27 5.36 1.27E-7 Thiazide-induced adverse metabolic effects in hypertensive patients
THCA cis rs7762018 1 rs4716380 chr6:170090399 WDR27 chr6:169857307-170102159:- -0.19 -5.77 1.45E-8 Thiazide-induced adverse metabolic effects in hypertensive patients
THCA cis rs875971 1 rs4717292 chr7:65895598 ASL chr7:65540776-65558321:+ -0.16 -4.18 3.49E-5 Aortic root size
THCA cis rs875971 1 rs4717292 chr7:65895598 GUSB chr7:65425675-65447246:- 0.27 5.27 2.11E-7 Aortic root size
THCA cis rs875971 1 rs4717292 chr7:65895598 RABGEF1 chr7:66093890-66276446:+ 0.65 14.02 1.14E-37 Aortic root size
THCA cis rs875971 1 rs4717300 chr7:65947380 ASL chr7:65540776-65558321:+ -0.16 -4.21 3.02E-5 Aortic root size
THCA cis rs875971 1 rs4717300 chr7:65947380 GUSB chr7:65425675-65447246:- 0.27 5.25 2.33E-7 Aortic root size